May 8, 2025

What Sentence Embeddings Really Store and How RAG vs. HYDE Leverage Them

A deep dive into sentence embeddings and how RAG and HYDE use them to ground or imagine knowledge. When should you trust retrieval vs. generation? This post breaks it down.

Published by:
Jack Spolski
Santiago Pourteau

In modern AI applications, the challenge of interpreting and comparing natural language at scale is elegantly addressed by sentence embeddings. By converting full sentences or short passages into fixed-length vectors, these embeddings encapsulate semantic meaning, syntactic structure, and contextual nuances, enabling machines to perform tasks such as semantic search, clustering, and text generation with remarkable efficiency. Although these vectors are often treated as inscrutable, their internal structure holds a wealth of information about intent, tone, and nuance, qualities that directly affect higher-level systems when they retrieve or generate content.


This article explores the inner workings of sentence embeddings and examines how two prominent retrieval-generation architectures, Retrieval-Augmented Generation (RAG) and HYDE, utilize the information encoded within those vectors. We begin by detailing what aspects of language embeddings capture, before presenting each method in turn. Along the way, readers will gain insight into how to decide between the explicit grounding of RAG and the hypothetical-document strategy of HYDE when building robust, production-grade AI solutions.

What Are Sentence Embeddings?

Sentence embeddings are mappings from variable-length text inputs to fixed-dimensional vector spaces. Formally, an embedding function f takes a string s and produces a vector v = f(s) Rd. When two sentences share similar meaning or context, their corresponding vectors lie close together in this space, as measured by metrics like cosine similarity or Euclidean distance. This transformation from text to numbers equips standard machine-learning algorithms with the ability to treat language data quantitatively, simplifying tasks such as k-nearest neighbors retrieval or clustering.

A sentence embedding model must balance expressiveness with efficiency. Most Transformer-based encoders, such as BERT or RoBERTa, restrict inputs to a maximum of 512 subword tokens. Longer texts are typically truncated or processed in sliding windows, though specialized models (e.g., Longformer, BigBird) extend this limit to thousands of tokens. For texts that exceed any model’s cap, common solutions include splitting the text into segments and aggregating their embeddings or employing hierarchical pipelines that encode at the sentence and then document level.

The key advantage of sentence embeddings is their versatility. By representing sentences as numeric vectors, developers unlock a broad array of downstream capabilities from semantic search engines to lightweight classifiers without manual feature engineering.

Methods for Building Sentence Embeddings

Different training paradigms and architectures yield embeddings with distinct characteristics. Below, we expand on four widely used approaches, each of which can be illustrated with an accompanying diagram:

Transformer-Based Pooling

Pre-trained language models such as BERT, RoBERTa, or ALBERT can be repurposed for sentence embeddings by applying a pooling operation over their final hidden states. In a typical workflow, a sentence is tokenized and passed through the Transformer. The hidden vectors for each token in the final layer are then aggregated, commonly by taking their elementwise mean or maximum, to produce a single d-dimensional vector. While this method leverages the deep contextual representations of Transformers, the resulting vectors are not explicitly optimized for semantic similarity tasks, and may require further fine-tuning to align cosine distances with desired notion of closeness.

Figure 1. BERT Architecture

Siamese and Triplet Network Models

Sentence-BERT (SBERT) exemplifies this family of models, in which two or three identical Transformer encoders share weights. During training, pairs or triplets of sentences, drawn from datasets such as natural language inference (NLI) or semantic textual similarity (STS), are used to learn an embedding space where semantically related sentences are pulled together and unrelated ones are pushed apart. The resulting embeddings exhibit strong alignment with human judgments of similarity, making them a go-to choice for tasks like paraphrase detection and clustering.

Contrastive Learning Approaches

Techniques like SimCSE employ contrastive loss to refine embeddings without requiring external labeled pairs. A single sentence is passed through the encoder twice, with stochastic variations introduced via dropout or simple data augmentations. These two outputs form a positive pair, while other sentences in the batch serve as negatives. The contrastive objective encourages the model to distinguish each sentence from all others, resulting in a uniform and discriminative embedding space that excels on retrieval and ranking benchmarks.

Universal Sentence Encoder (USE)

USE offers another route, trained on a mixture of unsupervised and supervised tasks, ranging from conversational response prediction to translation alignment. Available in Transformer and Deep Averaging Network (DAN) variants, USE produces 512-dimensional embeddings that capture broad semantic, stylistic, and (in multilingual versions) cross-lingual signals. While the DAN variant trades some contextual precision for speed, the Transformer version provides richer representations suitable for production workloads.

Figure 2. USE Architecture

RAG vs. HYDE: Two Paths Through the Embedding Space

Modern retrieval-generation systems rely on sentence embeddings not only to measure similarity, but also to guide the incorporation of external knowledge. The two principal paradigms, Retrieval-Augmented Generation (RAG) and Hypothetical Document Embeddings (HYDE), diverge in how they leverage embedding representations and therefore in the guarantees they offer.

RAG integrates an explicit retrieval step within the generation pipeline. First, the user query is encoded into an embedding and used to perform a nearest-neighbor search over a vector store of real document or passage embeddings. The top‑kk candidates are then concatenated or provided as context to a generative model, which produces the final output. This approach ensures that every generated token is grounded in accessible, inspectable source material, making it well-suited for applications that demand factual accuracy and provenance.

Figure 3. RAG Pipeline Diagram

In contrast, HYDE begins by prompting a language model to imagine an ideal answer or document for the given query. This synthetic text is then embedded and used to retrieve real passages from the vector store. Because the initial embedding originates from the model’s own internal knowledge, HYDE can surface relevant documents even when the original query is vague or under-specified. However, this indirect grounding introduces a risk: if the hypothetical text misrepresents the user’s intent, the retrieved documents may prove irrelevant.

Figure 4. HyDE Pipeline Diagram


Embedding-Centric Comparison


Both RAG and HYDE depend on the quality of sentence embeddings. In RAG, the embedding must align user queries with relevant documents; in HYDE, it must capture the essence of a hypothetical answer and map it to real-world content. When selecting between these paradigms, practitioners should consider the trade-offs between explicit grounding and creative generalization, bearing in mind the embedding’s role in driving retrieval precision and recall. RAG tends to do well in scenarios requiring factual accuracy and verifiable references, such as legal search, technical support, or compliance documentation, where grounding responses in concrete sources is essential. In contrast, HYDE is effective for exploratory or under-specified queries, like brainstorming tools, creative writing assistants, and ideation platforms, where its generation-first approach can infer latent intent and surface broader concept matches. Furthermore, the embedding model itself affects each architecture’s outcomes: high-dimensional, domain-specific embeddings (e.g., an SBERT variant fine-tuned on customer support data) can significantly boost RAG’s retrieval precision by capturing niche terminology, while embeddings trained with contrastive objectives (e.g., SimCSE) yield more uniform and discriminative spaces, enhancing HYDE’s ability to craft meaningful pseudo-documents. Conversely, embeddings that lack semantic cohesion or are misaligned with the target domain can hinder both pipelines, diminishing RAG’s recall of relevant passages and causing HYDE to generate misleading hypotheses. Therefore, carefully selecting and tuning embedding granularity, training objectives, and domain alignment is crucial for optimizing RAG or HYDE workflows to meet specific use-case requirements.

Conclusion

By examining what information sentence embeddings encode, and how RAG and HYDE harness that information, we gain practical guidance for designing AI systems that balance factual grounding with flexible inference. Whether prioritizing precision and transparency with RAG or exploring latent intent through HYDE, the choice ultimately hinges on the embedding architecture, training regime, and downstream requirements of your application.

Further Reading
  • Reimers, N. & Gurevych, I. (2019). Sentence-BERT: Sentence Embeddings using Siamese BERT Networks.

  • Tianyu Gao et al. (2022). SimCSE: Simple Contrastive Learning of Sentence Embeddings.

  • Lewis, P., et al. (2020). RAG: Retrieval-Augmented Generation for Knowledge-Intensive NLP Tasks.

  • Developer blogs on HYDE implementations in open-source frameworks.

—Written by the Wollen Labs team.
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